Bio/Biochem 2A: Assemblies of Molecules, Cells, and Groups of Cells
The membrane as a gate, the organelles as a factory floor, the cytoskeleton as both scaffold and engine, and the tissues they build.
23 topics · 89 questions
Each topic is a path, not a menu: work down it in order and every question builds on the one above. Click any of them to watch the answer draw itself.
2A. The Fluid Mosaic Model
- How it worksHow do phospholipids arrange themselves into a bilayer the moment they hit water?
- How it worksWalk me through what a membrane protein does as it drifts sideways through the lipid sea.
- Common mistakeWhy isn't the plasma membrane a rigid sheet with proteins nailed into fixed spots?
- Going furtherWhat happens to membrane fluidity as the temperature drops toward freezing?
2A. Membrane Lipids: Phospholipids, Steroids, and Waxes
- How it worksHow does cholesterol wedge between phospholipid tails and buffer a membrane at both temperature extremes?
- How it worksShow me how a phospholipid, a steroid, and a wax differ in shape and in what they do to a membrane.
- Common mistakeWhy doesn't adding cholesterol simply make a membrane stiffer at every temperature?
2A. Membrane Proteins and Membrane Dynamics
- How it worksHow do integral and peripheral membrane proteins sit differently in the bilayer?
- How it worksWalk me through a transmembrane helix threading its greasy stretch through the lipid core.
- Going furtherWhat changes about a membrane protein's job once sugar chains are hung off its outer face?
- Common mistakeWhy isn't every protein in a membrane free to wander anywhere across the cell surface?
2A. Passive Diffusion Across the Membrane
- How it worksHow does a concentration gradient turn random molecular jiggling into net one-way movement?
- How it worksShow me which molecules slip straight through the lipid core and which get stopped cold.
- Worked exampleFind which of CO2, glucose, and a sodium ion crosses a bare bilayer fastest, and explain the order.
- Common mistakeWhy doesn't diffusion stop the instant the concentrations match on both sides?
2A. Osmosis and Osmotic Pressure
- How it worksHow does water move toward the side with more solute when the solute itself cannot cross?
- Worked exampleFind the osmotic pressure of 0.15 M NaCl at 310 K, and explain why that 0.15 gets doubled.
- Common mistakeWhy isn't osmotic pressure a push from the solute rather than a pull on the water?
- Going furtherWhat happens to a plant cell and an animal cell dropped into the same hypertonic bath?
2A. Facilitated Diffusion and Membrane Channels
- How it worksHow does a carrier protein change shape to hand glucose across without spending any ATP?
- How it worksWalk me through the difference between a channel that stays open and a carrier that cycles.
- Going furtherWhat happens to the transport rate once every carrier in the membrane is already occupied?
- Common mistakeWhy isn't facilitated diffusion a kind of active transport just because a protein is involved?
2A. Active Transport and the Sodium-Potassium Pump
- How it worksWalk me through one full cycle of the sodium-potassium pump, three sodium out and two potassium in.
- Worked exampleFind the net charge a cell exports after 1000 turns of the sodium-potassium pump.
- Common mistakeWhy isn't the sodium-potassium pump just a channel that happens to be picky about ions?
- Going furtherWhat happens to cell volume and voltage when ouabain locks that pump shut?
2A. Secondary Active Transport
- How it worksHow does a sodium gradient built by one pump pay for a different molecule's uphill trip?
- How it worksShow me a symporter and an antiporter riding the same gradient in opposite directions.
- Worked exampleWalk me through how one intestinal cell pulls glucose out of a nearly empty gut lumen.
- Common mistakeWhy doesn't blocking the sodium-potassium pump leave secondary transport running normally?
2A. Membrane Potential
- How it worksHow do unequal ion concentrations plus a picky membrane add up to a voltage?
- Worked exampleFind the potassium equilibrium potential for 140 mM inside and 5 mM outside at 37 degrees C.
- Common mistakeWhy isn't the resting potential caused by extra negative ions piling up in the cytoplasm?
- Going furtherWhat happens to the voltage the instant the membrane becomes permeable to sodium?
2A. Membrane Receptors
- How it worksHow does a ligand binding on the outside twist the part of the receptor sitting inside?
- Going furtherWhat happens to a cell's sensitivity when it pulls receptors off its surface after hours of signal?
- Common mistakeWhy isn't receptor specificity about the signal being small enough to squeeze through?
2A. Endocytosis and Exocytosis
- How it worksWalk me through a clathrin coat bending a flat patch of membrane into a sealed vesicle.
- How it worksHow does a secretory vesicle fuse with the surface and dump its cargo outside the cell?
- Going furtherWhat happens to total surface area during a burst of exocytosis with no endocytosis to match it?
- Common mistakeWhy isn't phagocytosis the same process as pinocytosis just scaled up?
2A. Intercellular Junctions: Gap, Tight, and Desmosomes
- How it worksHow does a tight junction seal the gap between two cells so nothing leaks past?
- How it worksShow me ions passing straight from one cytoplasm into the next through a gap junction pore.
- Common mistakeWhy isn't a desmosome able to stop fluid leaking between the two cells it holds together?
- Ties togetherHow do gap junctions in cardiac muscle let the whole heart contract as one unit?
2A. Defining Characteristics of Eukaryotic Cells
- How it worksHow does splitting a cell into compartments let incompatible chemistry run at the same time?
- How it worksWalk me through the three features that define a eukaryote: a nuclear envelope, organelles, and mitosis.
- Going furtherWhat happens to the surface-area-to-volume ratio as a cell grows bigger?
2A. The Nucleus and Nucleolus
- How it worksHow does a nuclear pore let a ribosomal subunit out while keeping chromatin in?
- How it worksWalk me through the nucleolus from rRNA transcription to a finished subunit leaving the nucleus.
- Common mistakeWhy isn't the nucleolus a membrane-bound organelle like the ones surrounding it?
- Going furtherWhat happens to the nuclear envelope the moment a cell enters mitosis?
2A. Mitochondria
- How it worksHow does folding the inner membrane into cristae multiply the ATP a mitochondrion can make?
- How it worksShow me why the intermembrane space and the matrix have to stay chemically separate.
- Common mistakeWhy isn't mitochondrial self-replication the same thing as the cell splitting its mitochondria in two?
- Ties togetherHow does an ancient bacterium living inside another cell explain everything odd about mitochondria?
2A. The Endoplasmic Reticulum, Rough and Smooth
- How it worksWalk me through a ribosome docking on the rough ER and threading a new protein into the lumen.
- How it worksHow does the smooth ER build membrane lipids and detoxify drugs in the very same tubes?
- Going furtherWhat happens inside a liver cell's smooth ER after weeks of heavy drug exposure?
- Common mistakeWhy isn't every protein a cell makes threaded through the endoplasmic reticulum?
2A. The Golgi Apparatus and Protein Trafficking
- How it worksWalk me through a secreted protein's whole route from rough ER through the Golgi to the cell surface.
- How it worksHow do sugar tags added inside the Golgi act as shipping labels for different destinations?
- Worked exampleTrace where a lysosomal enzyme ends up when its mannose-6-phosphate tag never gets added.
- Common mistakeWhy isn't the Golgi just a warehouse holding proteins until the cell needs them?
- Going furtherWhat changes about the route when a protein is bound for the membrane instead of the outside?
2A. Lysosomes and Peroxisomes
- How it worksHow does the lysosome's acid interior both power its enzymes and protect the cytoplasm?
- How it worksShow me a peroxisome chopping a long fatty acid down and neutralizing the peroxide it makes.
- Common mistakeWhy isn't a peroxisome just a lysosome that specializes in lipids?
- Going furtherWhat happens to a cell over years when one single lysosomal enzyme is missing from birth?
2A. Microfilaments and Intermediate Filaments
- How it worksHow does a ring of actin tighten like a drawstring and cleave one cell into two?
- How it worksWalk me through why intermediate filaments bear tension while microfilaments generate movement.
- Common mistakeWhy isn't the cytoskeleton a fixed scaffold that holds its shape the way a skeleton does?
2A. Microtubules, Centrioles, and Motor Proteins
- How it worksHow do a microtubule's plus and minus ends give kinesin and dynein opposite directions to walk?
- How it worksWalk me through a centrosome nucleating microtubules and organizing them into a spindle.
- Worked exampleTrace where an axon's vesicles pile up when dynein is disabled and kinesin still works.
- Going furtherWhat happens to a cell's microtubules when colchicine stops tubulin from polymerizing?
2A. Cilia and Flagella
- How it worksWalk me through the nine outer doublets and two central tubules that make an axoneme bend.
- How it worksHow does dynein sliding one doublet past its neighbor turn into a whip-like beat?
- Common mistakeWhy isn't a bacterial flagellum built the same way as a eukaryotic flagellum?
- Going furtherWhat happens to airway clearance and fertility together when the dynein arms are missing?
2A. Epithelial Tissue
- How it worksHow do simple, stratified, squamous, cuboidal, and columnar combine into every epithelium's name?
- How it worksWalk me through an epithelial cell carrying different transporters on its apical and basal faces.
- Going furtherWhat happens to a barrier's job when one layer of cells becomes twenty stacked layers?
- Common mistakeWhy isn't epithelium free-floating tissue with nothing anchoring it underneath?
2A. Connective Tissue
- How it worksHow does the matrix between the cells, not the cells themselves, set each connective tissue's properties?
- How it worksShow me collagen, elastin, and ground substance doing three different mechanical jobs.
- Common mistakeWhy isn't blood disqualified as connective tissue just because it flows?
- Ties togetherHow do the junctions holding an epithelium together anchor it to the connective tissue below?
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